PP_003RPFV.1

USA/PP_003RPFV.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573019.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
4007 (57.6%)
# of SNPs
5
# of deleted bases
109498
# of stop codons
1
Stop Codons
OPG068:359

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C49275T
  • A49532G
  • C50255T
  • T51168C
  • A53207C
Deletions

53256-162753
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG068

  • OPG068:R359*
  • OPG068:I444M

OPG071

  • OPG071:L411W
Deletions
N/A
Insertions
N/A

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