PP_003RPEX.1

USA/PP_003RPEX.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-01 09:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573015.1
Submitting group
Date submitted
2025-09-01 09:18:58 UTC
Date released
2026-03-03 18:03:06 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
9504 (4.87%)
# of SNPs
4
# of inserted bases
36
# of deleted bases
133
# of frame shifts
1
Frame shifts
OPG133:236-711(nt:113564-114991)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A114899T
  • C114901G
  • C120252T
  • A120965G
Deletions

114902-114987, 114992-115038
Insertions

ins_116671:ATTACTATTACTATTACTATTACTATTACTATTACT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions

OPG133

OPG133:221-235
Insertions

OPG135

ins_OPG135:84:SNSNSNSNSNSN

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