PP_003R8UH.1

Display Name: Netherlands/PP_003R8UH.1/2025-05-16
C. Maissan, J. Cremer, F. Zwagemaker, L. van de Nes-Reijnen & R. Bodewes

Submission details

Submission ID
PV870356.1
Submitting group
Date submitted
2025-08-27 15:16:59 UTC
Date released
2025-08-27 15:31:59 UTC

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-27 15:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute for Public Health and the Environment RIVM, Centre for Infectious Disease Research, Diagnostics and laboratory Surveillance (IDS)

Alignment and QC metrics

Completeness
99.49%
Length
15813
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
518
Total unknown nucs
0

Sample details

Earliest release date
2025-07-29
Collection country
Netherlands
Collection date
2025-05-16
Collection date (lower bound)
2025-05-16
Collection date (upper bound)
2025-05-16
Isolate name
MVs/Gelderland.NLD/20.25[D8]

Genotype

Genotype
D8

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-07-29
NCBI update date
2025-07-29

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • A81G
  • A84G
  • G97A
  • G122A
  • T224C
  • A257G
  • G269A
  • G293A
  • G305A
  • C341T
  • A344G
  • G353A
  • G368A
  • C395T
  • A413G
  • T422C
  • T449C
  • C518T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    C

  • C:K78R
  • C:L148M
  • C:G181V

    • F

  • F:A9V
  • F:F11V

    • H

  • H:G235E
  • H:G243D
  • H:S250G
  • H:T307I
  • H:S318G
  • H:R334Q
  • H:N390I
  • H:E395G
  • H:A400T
  • H:N416D
  • H:T446S
  • H:V451M
  • H:K575Q
  • H:V608A

    • L

  • L:P43S
  • L:A81T
  • L:A252T
  • L:P275S
  • L:F321C
  • L:E329D
  • L:E368A
  • L:C436W
  • L:M462I
  • L:M515L
  • L:L610S
  • L:Y613H
  • L:V618I
  • L:E628K
  • L:V632I
  • L:N641D
  • L:I650M
  • L:T652A

    • N

  • N:S144F
  • N:I406T
  • N:K441R
  • N:G443S
  • N:Y451N
  • N:A459L
  • N:P467L
  • N:M471T
  • N:I475T
  • N:G509S

    • P

  • P:E54K
  • P:T92A
  • P:I155N
  • P:K195R
  • P:S219G
  • P:T223A
  • P:S263L
  • P:A269V
  • P:I282T
  • P:N300D
  • P:R355K
  • P:V414A
  • P:V446M
  • P:G457S
  • P:A459V

    • V

  • V:E54K
  • V:T92A
  • V:I155N
  • V:K195R
  • V:S219G
  • V:T223A
  • V:G237S
    • Deletions
    None
    Insertions
    None

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