PP_003R86U.1

Display Name: USA/PP_003R86U.1/2025-04-23
J. M. Garrigues & N. M. Green

Submission details

Submission ID
PV686489.1
Submitting group
Date submitted
2025-08-27 15:16:59 UTC
Date released
2025-08-27 15:31:59 UTC

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-27 15:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Los Angeles County Public Health Laboratories

Alignment and QC metrics

Completeness
99.44%
Length
15831
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
530
Total unknown nucs
26

Sample details

Earliest release date
2025-05-28
Collection subdivision level 1
California
Collection country
USA
Collection date
2025-04-23
Collection date (lower bound)
2025-04-23
Collection date (upper bound)
2025-04-23
Isolate name
MVs/California.USA/17.25[D8]

Genotype

Genotype
D8

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-05-28
NCBI update date
2025-05-28

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • A84G
  • G97A
  • G122A
  • T224C
  • A257G
  • G269A
  • G293A
  • G305A
  • C341T
  • A344G
  • G353A
  • G368A
  • A413G
  • T422C
  • T449C
  • C518T
  • C538T
  • T572C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    C

  • C:D5G
  • C:K78R
  • C:G181V

    • F

  • F:A9V
  • F:F11V
  • F:S276A
  • F:H419R
  • F:G519R

    • H

  • H:R175K
  • H:G235E
  • H:G243E
  • H:A267I
  • H:R334Q
  • H:N390I
  • H:A400T
  • H:V412L
  • H:N416D
  • H:T446S
  • H:V451M
  • H:K575Q
  • H:V608A

    • L

  • L:P43S
  • L:A81T
  • L:R142K
  • L:A252T
  • L:P275S
  • L:F321C
  • L:E329D
  • L:L610S
  • L:Y613H
  • L:R623K
  • L:E628K
  • L:V632I
  • L:N641D
  • L:I650M
  • L:T652A
  • L:D1037G
  • L:R1044G
  • L:V1343I

    • N

  • N:S144F
  • N:K214Q
  • N:I406T
  • N:K441R
  • N:G443S
  • N:E446G
  • N:Y451N
  • N:S457I
  • N:A459L
  • N:P467L
  • N:M471T
  • N:R497K
  • N:G509S

    • P

  • P:E54K
  • P:T92A
  • P:K195R
  • P:S219G
  • P:A269V
  • P:G270E
  • P:I282T
  • P:K350R
  • P:R355K
  • P:V414A
  • P:V446M
  • P:A459V

    • V

  • V:E54K
  • V:T92A
  • V:K195R
  • V:S219G
  • V:G237S
    • Deletions
    None
    Insertions
    None

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