PP_003GK8Y.1

Display Name: Japan/PP_003GK8Y.1/2025-07-07
R. Kumagai, K. Takahashi, F. Miyake, T. Chiba, K. Wada, W. Okada, A. Amano & N. Toyoda

Submission details

Submission ID
LC885310.1
Submitting group
Date submitted
2025-08-27 15:15:27 UTC
Date released
2025-08-27 15:24:17 UTC

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-27 15:16insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Alignment and QC metrics

Completeness
2.83%
Length
450
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
37
Total unknown nucs
0

Sample details

Earliest release date
2025-08-19
Collection subdivision level 1
Tokyo
Collection country
Japan
Collection date
2025-07-07
Collection date (lower bound)
2025-07-07
Collection date (upper bound)
2025-07-07
Isolate name
MVs/Tokyo.JPN/27.25/25236[B3]

Genotype

Genotype
B3

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-08-19
NCBI update date
2025-08-19

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • C1253T
  • C1265A
  • T1328C
  • G1334A
  • C1337T
  • A1394G
  • A1397G
  • G1398A
  • C1409T
  • A1415G
  • T1418C
  • G1434A
  • G1435A
  • T1436C
  • G1439A
  • A1449C
  • G1451A
  • T1458C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    N

  • N:G431R
  • N:G443N
  • N:Y451H
  • N:G455E
  • N:S456P
  • N:A462S
  • N:S470G
  • N:M471T
  • N:S481F
  • N:G482S
  • N:L505S
  • N:G509D
    • Deletions
    None
    Insertions
    None

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