PP_0033YYW.1

Display Name: Sierra_Leone/PP_0033YYW.1/2025-06-24
Allan K. O. Campbell, Martin Faye, Mohamed Kane, Mignane Ndiaye, Ifeanyi Omah, Andy Mahine Diouf, Mamadou Aliou Barry, Aboubacry Gaye, Moussa Moise Diagne, Aminata Koroma, Joseph Kanu, Mohamed Boie, Zikan Koroma, Doris Harding, Boubacar Diallo, Abdurahmane Sow, Amadou Alpha Sall, Ibrahima Soce Fall, James Squire, Mohamed Alex Vandi & Foday Sahr

Submission details

Submission ID
PL_25_06_030
Submitting group
Date submitted
2025-08-17 21:05:48 UTC
Date released
2025-08-17 21:09:26 UTC

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-17 21:05oakcampbell25@gmail.comOPEN
Data use terms URL

Authors

Author affiliations
National Public Health Agency (NPHA) Sierra Leone, Central Public Health Reference Laboratory, Institute Pasteur de Dakar,University of Endinburg

Clade & Lineage

Clade
IIb
Lineage
A.2.2
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
68.40%
Length
193166
Total ambiguous nucs
5
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
47
Total stop codons
0
Total unknown nucs
58275

Sample details

Earliest release date
2025-08-17
Collection subdivision level 1
Kambia
Collection country
Sierra Leone
Collection date
2025-06-24
Collection date (lower bound)
2025-06-24
Collection date (upper bound)
2025-06-24

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C6555T
  • C10173T
  • C13298T
  • C14790T
  • C18792T
  • G19242A
  • G20913A
  • C21359T
  • G21991A
  • G23118A
  • C23759T
  • G28139A
  • T28175C
  • C34472T
  • C34578T
  • G40863A
  • T47883C
  • G48172A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG021

  • OPG021:S196L

    • OPG025

  • OPG025:D160N

    • OPG031

  • OPG031:D13N

    • OPG036

  • OPG036:S51F

    • OPG037

  • OPG037:S148L
  • OPG037:V359I

    • OPG044

  • OPG044:D17N

    • OPG053

  • OPG053:G38E

    • OPG060

  • OPG060:S107L

    • OPG083

  • OPG083:R341K

    • OPG096

  • OPG096:D18N

    • OPG097

  • OPG097:D40N

    • OPG098

  • OPG098:E162K

    • OPG106

  • OPG106:R29K

    • OPG111

  • OPG111:H39Q

    • OPG112

  • OPG112:E85K

    • OPG122

  • OPG122:H198Y

    • OPG132

  • OPG132:M357I

    • OPG145

  • OPG145:D29N

    • OPG174

  • OPG174:G11R
  • OPG174:S44L

    • OPG176

  • OPG176:Q22*

    • OPG180

  • OPG180:D442N

    • OPG188

  • OPG188:H120Y

    • OPG198

  • OPG198:E57K

    • OPG204

  • OPG204:E314K

    • OPG210

  • OPG210:D1877N
    • Deletions
    None
    Insertions
    None

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