Allan K. O. Campbell, Edyth Parker, Ifeanyi Omah, Choe Miller, Julian Campbell, Vidalyn Folorunso, Naomi Daniel-Sesay, Anu J. Williams, Sia Mani, Roberta Lansana, Amanda Kargbo, Komba Koninga, Harry Adi, Simon Ruhweza, Abu James, Jonathan Greene, Monique Forster, John Klena, Crystal Gigante, Danny Park, Abebaw Kebede, Collins Tanui, Sofonias Tessema, Yenew Kebede, ..., Foday Sahr
Central Public Health Reference Laboratory, National Public Health Agency (NPHA) Sierra Leone, Africa Centers for Disease Control and Prevention, U.S. Centers for Disease Control and Prevention, World Health Organization, The Broad Institute of MIT and Harvard Cambridge MA USA, Institute of Genomics and Global Health Redeemer�s University Ede Osun State Nigeria,...
Clade & Lineage
Clade
IIb
Lineage
A.2.2
Outbreak
hMPXV-1
Alignment and QC metrics
Completeness
99.99%
Frame shifts
OPG174:290-347(nt:148355-148528)
Length
197189
Total ambiguous nucs
0
Total deleted nucs
21
Total frame shifts
1
Total inserted nucs
1
Total SNPs
81
Total stop codons
0
Total unknown nucs
10
Sample details
Earliest release date
2025-08-16
Collection subdivision level 1
Western-Area-Urban
Collection country
Sierra Leone
Collection date
2025-05-15
Collection date (lower bound)
2025-05-15
Collection date (upper bound)
2025-05-15
Nucleotide mutations
Mutations called relative to the NC_063383.1 reference