Allan K. O. Campbell, Edyth Parker, Ifeanyi Omah, Choe Miller, Julian Campbell, Vidalyn Folorunso, Naomi Daniel-Sesay, Anu J. Williams, Sia Mani, Roberta Lansana, Amanda Kargbo, Komba Koninga, Harry Adi, Simon Ruhweza, Abu James, Jonathan Greene, Monique Forster, John Klena, Crystal Gigante, Danny Park, Abebaw Kebede, Collins Tanui, Sofonias Tessema, Yenew Kebede, ..., Foday Sahr
Central Public Health Reference Laboratory, National Public Health Agency (NPHA) Sierra Leone, Africa Centers for Disease Control and Prevention, U.S. Centers for Disease Control and Prevention, World Health Organization, The Broad Institute of MIT and Harvard Cambridge MA USA, Institute of Genomics and Global Health Redeemer�s University Ede Osun State Nigeria,...
Clade & Lineage
Clade
IIb
Lineage
A.2.2
Outbreak
hMPXV-1
Alignment and QC metrics
Completeness
86.32%
Frame shifts
OPG174:290-347(nt:148355-148528)
Length
197196
Total ambiguous nucs
0
Total deleted nucs
13
Total frame shifts
1
Total inserted nucs
0
Total SNPs
59
Total stop codons
0
Total unknown nucs
26981
Sample details
Earliest release date
2025-08-16
Collection subdivision level 1
Western-Area-Rural
Collection country
Sierra Leone
Collection date
2025-05-15
Collection date (lower bound)
2025-05-15
Collection date (upper bound)
2025-05-15
Nucleotide mutations
Mutations called relative to the NC_063383.1 reference
Substitutions
C4611T
G4969A
C6105T
C6555T
G8560A
C10173T
C11100T
C11880T
G11924A
G11948A
C13298T
C14790T
G20913A
G21991A
G23118A
T28175C
C30636T
G32868A
Deletions
607-609, 148529-148535, 196615-196617
Insertions
None
Amino acid mutations
Mutations called relative to the NC_063383.1 reference