PP_003235E.1

Display Name: USA/PP_003235E.1/2025-07-08
Nicholas Rhoades, Ling Batoon, Samantha Hallis, Scott Vo, Roxana Flores, Nikos Gurfeild & Jeremy Corrigan

Submission details

Submission ID
VV01-25-Q-16798-WNV-M08760-240723
Submitting group
Date submitted
2025-08-13 14:49:09 UTC
Date released
2025-08-13 14:51:13 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-08-13 14:49nrhoadesOPEN
Data use terms URL

Authors

Author affiliations
San Diego County Public Health Laboratory

INSDC

BioProject accession
BioSample accession

Alignment and QC metrics

Completeness
99.22%
Length
10941
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
110
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-08-13
Collection subdivision level 1
California
Collection subdivision level 2
San Diego County
Collection country
USA
Collection date
2025-07-08
Collection date (lower bound)
2025-07-08
Collection date (upper bound)
2025-07-08

Host

Host name - scientific
Culex quinquefasciatus

Lineage

Lineage
1A

Sequencing

Sequencing instrument
Illumina Miseq

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • T1965C
  • T2052C
  • A2097C
  • A2136G
    • Deletions
    10970, 10971
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:K54R
  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • env

  • env:E150D
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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