PP_00322T4.1

USA/VV01-25-B-01943-B-WNV-M08760-240723/2025-06-19
Nicholas Rhoades, Ling Batoon, Samantha Hallis, Scott Vo, Roxana Flores, Nikos Gurfeild & Jeremy Corrigan

San Diego County Public Health Laboratory

Sample details

Collection date
2025-06-19
Sampling location
USA (San Diego County, California)

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Sequencing instrument
Illumina MiSeq

Submission details

Submission ID
VV01-25-B-01943-B-WNV-M08760-240723
Submitting group
Date submitted
2025-08-13 14:49:09 UTC
Date released
2025-08-13 14:51:13 UTC
Earliest release date
2025-08-13

Alignment and QC

Length
10933 (99.1%)
# of SNPs
110

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C52T
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • C1929T
  • T1965C
  • T2052C
  • A2097C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:E150D
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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