PP_00322QA.1

USA/PP_00322QA.1/2025-05-07
Nicholas Rhoades, Ling Batoon, Samantha Hallis, Scott Vo, Roxana Flores, Nikos Gurfeild & Jeremy Corrigan

San Diego County Public Health Laboratory

Sample details

Collection date
2025-05-07
Sampling location
USA (San Diego County, California)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-13 14:49nrhoadesOPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host

Sequencing

Sequencing instrument
Illumina Miseq

Submission details

Submission ID
VV01-25-B-01905-B-WNV-M08760-240723
Submitting group
Date submitted
2025-08-13 14:49:09 UTC
Date released
2025-08-13 14:51:13 UTC
Earliest release date
2025-08-13

Alignment and QC

Length
10933 (99.1%)
# of SNPs
107
# of ambiguous bases
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • T1965C
  • T2052C
  • A2097C
  • A2136G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:E150D
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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