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PP_00322MG.1
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Download metadata TSV
Display Name: Guinea/PP_00322MG.1/2024-12-13
E. V. Naidenova,
Y. M. Krasnov,
K. S. Zakharov,
M. Y. Kartashov,
A. V. Shipovalov,
A. B. Ibrahim,
E. A. Basov,
A. P. Smolina,
N. P. Guseva,
T. A. Polunina,
N. V. Kotova,
S. D. Katyshev,
S. Boumbaly &
M. S. Traore
Submission details
Submission ID
PV987608.1.L/PV987600.1.M/PV987592.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-11 16:43:10 UTC
Date released
2025-08-11 16:43:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-08-11 16:43
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
Alignment and QC metrics L
Completeness L
88.70%
Frame shifts L
RdRp:2179-2181(nt:6609-6618)
Length L
11970
Total ambiguous nucs L
0
Total deleted nucs L
1
Total frame shifts L
1
Total inserted nucs L
4
Total SNPs L
252
Total unknown nucs L
1227
Alignment and QC metrics M
Completeness M
53.22%
Length M
3560
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
163
Total unknown nucs M
704
Alignment and QC metrics S
Completeness S
86.30%
Length S
1646
Total ambiguous nucs S
0
Total deleted nucs S
14
Total frame shifts S
0
Total inserted nucs S
8
Total SNPs S
108
Total unknown nucs S
209
Sample details
Earliest release date
2025-08-09
Collection country
Guinea
Collection date
2024-12-13
Collection date (lower bound)
2024-12-13
Collection date (upper bound)
2024-12-13
Isolate name
742
Host
Host name - scientific
Rhipicephalus decoloratus
Host taxon ID
60189
INSDC
INSDC accession L
PV987608.1
INSDC accession M
PV987600.1
INSDC accession S
PV987592.1
NCBI release date
2025-08-09
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
88
A
L:
G
93
A
L:
A
124
G
L:
T
254
A
L:
A
298
G
L:
C
313
T
L:
T
340
C
L:
C
445
T
L:
G
553
A
L:
G
619
A
L:
C
904
T
L:
G
961
A
L:
A
1213
G
L:
T
1420
C
L:
C
1495
T
L:
A
1555
G
L:
T
1590
C
L:
A
1879
G
Show more
M
M:
A
1560
T
M:
A
1577
T
M:
T
1586
A
M:
G
1589
A
M:
G
1592
A
M:
G
1604
A
M:
A
1628
C
M:
A
1629
C
M:
C
1631
T
M:
C
1634
T
M:
T
1637
C
M:
T
1644
C
M:
T
1649
G
M:
A
1652
C
M:
A
1655
G
M:
A
1658
G
M:
C
1659
T
M:
C
1661
T
Show more
S
S:
G
20
T
S:
G
54
A
S:
C
82
T
S:
G
134
A
S:
C
142
T
S:
C
166
T
S:
G
169
A
S:
T
175
C
S:
C
178
A
S:
T
182
C
S:
G
189
A
S:
C
244
T
S:
G
262
A
S:
A
268
C
S:
G
271
A
S:
C
295
T
S:
C
310
T
S:
A
322
C
Show more
Deletions
L:6608, S:1531-1533, S:1542-1547, S:1553, S:1619-1622
Insertions
ins_S:1575:ACATT, ins_S:1564:AT, ins_S:1613:A, ins_L:6618:C, ins_L:6460:AAA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
R
490
W
GPC:
T
513
P
GPC:
P
523
S
GPC:
S
524
D
GPC:
D
525
G
GPC:
N
592
P
GPC:
V
598
T
GPC:
K
601
E
GPC:
Y
606
F
GPC:
R
609
K
GPC:
T
633
S
GPC:
V
718
A
GPC:
L
721
V
GPC:
L
725
F
GPC:
T
927
A
GPC:
K
929
R
GPC:
K
933
Q
GPC:
K
944
T
Show more
NP
NP:
S
109
N
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
L
821
V
RdRp:
T
830
H
RdRp:
S
867
Y
RdRp:
T
876
C
RdRp:
T
900
N
RdRp:
E
901
Y
RdRp:
E
939
A
RdRp:
G
1047
E
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
E
1452
D
RdRp:
P
1660
T
RdRp:
T
1675
N
Show more
Deletions
RdRp:2178
Insertions
ins_RdRp:2128:K
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