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PP_00322KL.1
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Download FASTA
Download metadata TSV
Display Name: Guinea/PP_00322KL.1/2024-12-12
E. V. Naidenova,
Y. M. Krasnov,
K. S. Zakharov,
M. Y. Kartashov,
A. V. Shipovalov,
A. B. Ibrahim,
E. A. Basov,
A. P. Smolina,
N. P. Guseva,
T. A. Polunina,
N. V. Kotova,
S. D. Katyshev,
S. Boumbaly &
M. S. Traore
Submission details
Submission ID
PV987606.1.L/PV987598.1.M/PV987590.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-11 16:43:10 UTC
Date released
2025-08-11 16:43:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-08-11 16:43
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
Alignment and QC metrics L
Completeness L
91.56%
Length L
11915
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
3
Total SNPs L
486
Total unknown nucs L
826
Alignment and QC metrics M
Completeness M
44.65%
Length M
3828
Total ambiguous nucs M
0
Total deleted nucs M
9
Total frame shifts M
0
Total inserted nucs M
9
Total SNPs M
408
Total unknown nucs M
1432
Alignment and QC metrics S
Completeness S
91.81%
Length S
1654
Total ambiguous nucs S
0
Total deleted nucs S
18
Total frame shifts S
0
Total inserted nucs S
19
Total SNPs S
171
Total unknown nucs S
118
Sample details
Earliest release date
2025-08-09
Collection country
Guinea
Collection date
2024-12-12
Collection date (lower bound)
2024-12-12
Collection date (upper bound)
2024-12-12
Isolate name
663
Host
Host name - scientific
Amblyomma variegatum
Host taxon ID
34610
INSDC
INSDC accession L
PV987606.1
INSDC accession M
PV987598.1
INSDC accession S
PV987590.1
NCBI release date
2025-08-09
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
133
T
L:
C
205
T
L:
G
217
A
L:
A
220
G
L:
C
223
T
L:
T
229
C
L:
T
253
C
L:
T
254
A
L:
G
286
A
L:
C
313
T
L:
A
316
G
L:
C
331
T
L:
T
340
C
L:
C
343
T
L:
C
445
T
L:
T
517
C
L:
C
541
T
L:
G
553
A
Show more
M
M:
C
651
T
M:
G
660
A
M:
C
662
T
M:
G
667
C
M:
A
668
T
M:
A
676
G
M:
A
677
G
M:
T
680
A
M:
G
681
C
M:
C
683
A
M:
A
684
T
M:
T
686
C
M:
G
693
A
M:
A
696
T
M:
T
698
C
M:
G
699
A
M:
A
700
G
M:
C
704
A
Show more
S
S:
G
20
T
S:
G
54
A
S:
G
134
A
S:
G
136
A
S:
C
142
T
S:
C
154
T
S:
T
155
C
S:
C
166
T
S:
G
169
A
S:
T
175
C
S:
C
178
A
S:
T
182
C
S:
G
189
A
S:
G
190
A
S:
C
208
T
S:
C
235
T
S:
C
244
T
S:
T
250
A
Show more
Deletions
M:1362-1364, M:3585-3590, S:1542-1547, S:1573, S:1574, S:1610-1619
Insertions
ins_S:1579:ATC, ins_S:1629:CTATCTTTCA, ins_S:1563:TATG, ins_S:1566:AT, ins_M:3600:NNNNNN, ins_M:1376:NTA, ins_L:6460:AAA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
A
190
T
GPC:
G
192
A
GPC:
N
196
K
GPC:
D
197
Q
GPC:
S
198
C
GPC:
A
201
T
GPC:
T
202
S
GPC:
E
203
R
GPC:
H
204
Q
GPC:
E
206
M
GPC:
S
207
P
GPC:
L
208
S
GPC:
S
211
P
GPC:
P
214
S
GPC:
G
215
N
GPC:
T
221
A
GPC:
I
223
P
GPC:
V
224
N
Show more
NP
NP:
V
27
I
NP:
Y
34
H
NP:
R
45
K
NP:
S
109
N
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
Y
60
N
RdRp:
N
206
Y
RdRp:
C
422
Y
RdRp:
S
498
N
RdRp:
I
505
T
RdRp:
C
648
S
RdRp:
K
673
R
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
G
778
D
RdRp:
N
779
S
RdRp:
S
782
D
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
A
1038
T
RdRp:
G
1164
E
Show more
Deletions
None
Insertions
ins_RdRp:2129:E
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