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PP_00322GT.1
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Download metadata TSV
Display Name: Guinea/PP_00322GT.1/2024-12-11
E. V. Naidenova,
Y. M. Krasnov,
K. S. Zakharov,
M. Y. Kartashov,
A. V. Shipovalov,
A. B. Ibrahim,
E. A. Basov,
A. P. Smolina,
N. P. Guseva,
T. A. Polunina,
N. V. Kotova,
S. D. Katyshev,
S. Boumbaly &
M. S. Traore
Submission details
Submission ID
PV987603.1.L/PV987595.1.M/PV987587.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-11 16:43:10 UTC
Date released
2025-08-11 16:43:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-08-11 16:43
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
Alignment and QC metrics L
Completeness L
89.82%
Length L
11970
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
3
Total SNPs L
429
Total unknown nucs L
1092
Alignment and QC metrics M
Completeness M
48.98%
Frame shifts M
GPC:177-182(nt:620-638),GPC:235-240(nt:793-812)
Length M
3897
Total ambiguous nucs M
0
Total deleted nucs M
8
Total frame shifts M
2
Total inserted nucs M
2
Total SNPs M
477
Total unknown nucs M
1275
Alignment and QC metrics S
Completeness S
91.87%
Length S
1658
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
6
Total SNPs S
182
Total unknown nucs S
116
Sample details
Earliest release date
2025-08-09
Collection country
Guinea
Collection date
2024-12-11
Collection date (lower bound)
2024-12-11
Collection date (upper bound)
2024-12-11
Isolate name
599
Host
Host name - scientific
Rhipicephalus decoloratus
Host taxon ID
60189
INSDC
INSDC accession L
PV987603.1
INSDC accession M
PV987595.1
INSDC accession S
PV987587.1
NCBI release date
2025-08-09
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
93
A
L:
A
113
G
L:
C
193
T
L:
C
205
T
L:
G
217
A
L:
C
223
T
L:
T
253
C
L:
T
254
A
L:
G
301
A
L:
C
313
T
L:
T
340
C
L:
C
343
T
L:
A
388
G
L:
C
421
T
L:
T
517
C
L:
C
541
T
L:
G
553
A
L:
A
571
G
Show more
M
M:
C
579
A
M:
C
580
G
M:
A
588
C
M:
C
593
T
M:
G
597
A
M:
A
598
C
M:
G
599
A
M:
T
603
A
M:
C
607
A
M:
A
608
G
M:
A
622
C
M:
C
625
A
M:
A
626
G
M:
G
627
T
M:
C
629
A
M:
C
631
T
M:
C
632
A
M:
A
633
G
Show more
S
S:
G
20
T
S:
G
54
A
S:
G
67
A
S:
C
82
T
S:
G
134
A
S:
G
136
A
S:
C
142
T
S:
C
154
T
S:
T
155
C
S:
C
166
T
S:
G
169
A
S:
T
175
C
S:
C
178
A
S:
T
182
C
S:
G
189
A
S:
G
190
A
S:
C
208
T
S:
C
235
T
Show more
Deletions
M:582-587, M:639, M:813
Insertions
ins_S:1539:NTCAC, ins_S:1580:C, ins_M:619:A, ins_M:792:A, ins_L:6457:NAN
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
T
162
P
GPC:
E
169
T
GPC:
S
171
T
GPC:
A
172
E
GPC:
A
190
T
GPC:
G
192
A
GPC:
D
197
Q
GPC:
S
198
C
GPC:
H
199
P
GPC:
A
201
T
GPC:
T
202
S
GPC:
E
203
R
GPC:
H
204
Q
GPC:
E
206
M
GPC:
S
207
P
GPC:
L
208
S
GPC:
S
211
P
GPC:
G
215
N
Show more
NP
NP:
V
27
I
NP:
Y
34
H
NP:
R
45
K
NP:
S
109
N
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
V
436
I
NP:
T
439
K
RdRp
RdRp:
S
6
N
RdRp:
I
13
V
RdRp:
Y
60
N
RdRp:
N
206
Y
RdRp:
S
498
N
RdRp:
I
505
T
RdRp:
C
648
S
RdRp:
K
673
R
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
P
774
L
RdRp:
G
778
D
RdRp:
N
779
S
RdRp:
S
782
D
RdRp:
I
783
V
RdRp:
K
809
R
RdRp:
G
812
E
Show more
Deletions
GPC:163-166, GPC:183, GPC:241
Insertions
ins_RdRp:2127:X
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