PP_003225F.1

Display Name: France/PP_003225F.1/2024
M. Gasparine & A. Falchi

Submission details

Submission ID
PV976885.1.S
Submitting group
Date submitted
2025-08-11 16:43:10 UTC
Date released
2025-08-11 16:43:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-08-11 16:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

Alignment and QC metrics S

Completeness S
77.45%
Frame shifts S
NP:391(nt:1224-1228),NP:419-483(nt:1310-1504)
Length S
1547
Total ambiguous nucs S
0
Total deleted nucs S
1
Total frame shifts S
2
Total inserted nucs S
3
Total SNPs S
165
Total unknown nucs S
250

Sample details

Earliest release date
2025-08-10
Collection country
France
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Isolate name
3424

Host

Host name - scientific
Ixodoidea
Host taxon ID

INSDC

INSDC accession S
NCBI release date
2025-08-10

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T132C
  • S:A150T
  • S:T155C
  • S:C166T
  • S:C178A
  • S:G189A
  • S:G190A
  • S:T199C
  • S:G202A
  • S:A209G
  • S:G221C
  • S:G224C
  • S:G233C
  • S:C235T
  • S:A239G
  • S:C241T
  • S:C244T
  • S:A247G
    • Deletions
    S:1229
    Insertions
    ins_S:1223:C, ins_S:1577:A, ins_S:1309:G

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:L26P
  • NP:N32I
  • NP:Y34H
  • NP:R45K
  • NP:S52G
  • NP:D56H
  • NP:A57P
  • NP:D60H
  • NP:I62V
  • NP:K91R
  • NP:E94Q
  • NP:G101A
  • NP:E112Q
  • NP:E121Q
  • NP:T124A
  • NP:G125N
  • NP:D136H
  • NP:E161Q
    • Deletions
    NP:392
    Insertions
    None

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