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Status
PP_003221P.1
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Download metadata TSV
Display Name: France/PP_003221P.1/2024
M. Gasparine &
A. Falchi
Submission details
Submission ID
PV976879.1.L/PV976878.1.M/PV976895.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-11 16:43:10 UTC
Date released
2025-08-11 16:43:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-08-11 16:43
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
University of Corsica, Unite des Virus Emergents
Alignment and QC metrics L
Completeness L
99.98%
Length L
12157
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
52
Total SNPs L
288
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
100.00%
Length M
5366
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
167
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
131
Total unknown nucs S
0
Sample details
Earliest release date
2025-08-10
Collection country
France
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Isolate name
3154
Host
Host name - scientific
Ixodoidea
Host taxon ID
297308
INSDC
INSDC accession L
PV976879.1
INSDC accession M
PV976878.1
INSDC accession S
PV976895.1
NCBI release date
2025-08-10
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
64
T
L:
T
65
C
L:
T
70
C
L:
G
93
A
L:
C
100
T
L:
T
151
C
L:
T
160
C
L:
T
254
A
L:
A
298
G
L:
C
313
T
L:
T
340
C
L:
C
427
T
L:
T
550
G
L:
G
553
A
L:
A
563
G
L:
C
568
T
L:
G
619
A
L:
A
677
G
Show more
M
M:
C
82
T
M:
G
124
A
M:
T
137
C
M:
G
175
T
M:
G
207
A
M:
C
217
T
M:
C
229
A
M:
T
259
C
M:
C
320
T
M:
C
356
T
M:
T
360
C
M:
A
364
G
M:
A
377
G
M:
T
385
C
M:
C
404
T
M:
T
406
C
M:
C
410
T
M:
G
414
A
Show more
S
S:
G
47
C
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
G
99
A
S:
G
100
A
S:
C
178
G
S:
T
181
C
S:
C
187
T
S:
G
189
A
S:
T
199
C
S:
G
202
A
S:
T
220
C
S:
G
229
A
S:
C
235
T
S:
A
247
G
S:
G
271
A
S:
T
274
C
Show more
Deletions
None
Insertions
ins_S:1581:T, ins_L:12096:TCATCGTCATCGTTATTATTTTGGGGTGTGGGGGGAACG, ins_L:12093:ACCACTCATTTCA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
C
11
Y
GPC:
R
28
I
GPC:
G
39
S
GPC:
P
42
L
GPC:
P
46
Q
GPC:
L
56
P
GPC:
S
90
P
GPC:
E
91
G
GPC:
V
98
A
GPC:
L
105
S
GPC:
G
108
S
GPC:
P
112
T
GPC:
S
113
G
GPC:
G
119
D
GPC:
A
122
T
GPC:
P
123
L
GPC:
N
131
S
GPC:
V
146
M
Show more
NP
NP:
R
15
K
NP:
R
45
K
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
R
270
G
NP:
S
301
G
NP:
K
428
R
NP:
T
429
I
NP:
V
436
I
NP:
S
451
P
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
T
163
A
RdRp:
S
201
G
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
R
1126
H
RdRp:
T
1182
I
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
V
1496
I
RdRp:
M
1647
L
RdRp:
P
1660
T
Show more
Deletions
None
Insertions
None
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