PP_0030SCF.1

Display Name: Spain/PP_0030SCF.1/2025-04-03
Cristina Andres, Alejandra Gonzalez Sanchez, Ignasi Prats, Karen Garcia Comunas, Elena Dima, Maria Carmen Martin, Tomas Pumarola & Andres Anton

Submission details

Submission ID
hRSV/A/Spain/CT-HUVH571183/2025
Submitting group
Date submitted
2025-06-30 12:59:16 UTC
Date released
2025-06-30 13:00:51 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-30 12:59agonzalezOPEN
Data use terms URL

Authors

Author affiliations
Hospital Universitari Vall d'Hebron - Vall d'Hebron Institut de Recerca

INSDC

BioProject accession
BioSample accession
INSDC accession

Alignment and QC metrics

Completeness
99.82%
Length
15204
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
8
Total SNPs
217
Total unknown nucs
0

Sample details

Earliest release date
2025-06-30
Collection subdivision level 1
Catalonia
Collection country
Spain
Collection date
2025-04-03
Collection date (lower bound)
2025-04-03
Collection date (upper bound)
2025-04-03

Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T59C
  • T66A
  • A67G
  • G74A
  • C90T
  • C183T
  • T231C
  • G587T
  • T619C
  • G637A
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1080G
  • T1359C
  • T1413A
  • T1422C
    • Deletions
    4592
    Insertions
    ins_3154:A, ins_15053:CAAAAA, ins_15115:T

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106R
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151Q
  • G:N178G
  • G:K221R
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L

    • L

  • L:Y74C
  • L:P171L
  • L:R256K
  • L:V445I
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:D1644E
  • L:V1721I
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:R2117K

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:T79A

    • N

  • N:V352A

    • NS1

  • NS1:G2D

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None

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