PP_002YX20.1

Display Name: Croatia/PP_002YX20.1/2024-08-24
T. Vilibic-Cavlek, L. Barbic, A. Klobucar, M. Vucelja, M. Bogdanic, D. Sabadi, M. Kutlesa, B. Gjurasin, V. Stevanovic, M. Curman Posavec, L. Bjedov, M. Boljfetic, T. Jozic-Novinc, R. Skara, M. Tomljenovic, Z. Hruskar, M. Al-Mufleh, T. Potocnik-Hunjadi, I. Roncevic & V. Savic

Submission details

Submission ID
PV737703.1
Submitting group
Date submitted
2025-06-24 02:54:47 UTC
Date released
2025-06-24 02:55:02 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-24 02:54insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Croatian Veterinary Institute, Poultry Center

Alignment and QC metrics

Completeness
8.29%
Frame shifts
NS5:800-905(nt:10076-10395)
Length
796
Total ambiguous nucs
0
Total deleted nucs
118
Total frame shifts
1
Total inserted nucs
0
Total SNPs
163
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-06-23
Collection subdivision level 1
Sisak
Collection country
Croatia
Collection date
2024-08-24
Collection date (lower bound)
2024-08-24
Collection date (upper bound)
2024-08-24
Isolate name
WNV/HR/bird/75/2024

Host

Host name - scientific
Corvus cornix
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-06-23
NCBI update date
2025-06-23

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G9216A
  • C9219A
  • C9220T
  • C9222G
  • A9225G
  • A9228G
  • G9231T
  • T9234G
  • C9241T
  • C9244A
  • G9245A
  • T9246G
  • T9252C
  • C9255A
  • C9258A
  • C9259A
  • G9260A
  • G9267A
    • Deletions
    9169-9210, 10000-10075
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    NS5:774-799
    Insertions
    None

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