PP_002YUG9.1

Display Name: Tajikistan/PP_002YUG9.1/2023-05-23
D'Addiego, J.; Mullojanova, M.; Hikmatov, T.; Tishkova, F.; Hewson, R.

Submission details

Submission ID
PV738575.1.S
Submitting group
Date submitted
2025-06-16 03:16:46 UTC
Date released
2025-06-16 03:17:20 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-16 03:16insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics S

Completeness S
29.43%
Length S
503
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
61
Total unknown nucs S
11

Sample details

Earliest release date
2025-06-15
Collection country
Tajikistan
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Isolate name
CCHFV_24_179

Host

Host name - scientific
Hyalomma anatolicum
Host taxon ID

INSDC

INSDC accession S
NCBI release date
2025-06-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:A856G
  • S:T862C
  • S:G864A
  • S:C871T
  • S:G879A
  • S:G901A
  • S:T904C
  • S:T907C
  • S:C925T
  • S:T928C
  • S:T934C
  • S:A937G
  • S:A955G
  • S:A956G
  • S:C958T
  • S:T991C
  • S:T997C
  • S:T1006C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:K354R
    • Deletions
    None
    Insertions
    None

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