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Status
PP_002YUFB.1
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Display Name: Tajikistan/PP_002YUFB.1/2023-05-23
D'Addiego, J.;
Mullojanova, M.;
Hikmatov, T.;
Tishkova, F.;
Hewson, R.
Submission details
Submission ID
PV738574.1.L/PV738573.1.M/PV738572.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-16 03:16:46 UTC
Date released
2025-06-16 03:17:20 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-16 03:16
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment and QC metrics L
Completeness L
70.35%
Length L
11768
Total ambiguous nucs L
13
Total deleted nucs L
12
Total frame shifts L
0
Total inserted nucs L
47
Total SNPs L
1135
Total unknown nucs L
3202
Alignment and QC metrics M
Completeness M
90.64%
Frame shifts M
GPC:41-44(nt:211-224)
Length M
5296
Total ambiguous nucs M
9
Total deleted nucs M
10
Total frame shifts M
1
Total inserted nucs M
11
Total SNPs M
910
Total unknown nucs M
422
Alignment and QC metrics S
Completeness S
72.61%
Length S
1237
Total ambiguous nucs S
1
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
170
Total unknown nucs S
21
Sample details
Earliest release date
2025-06-15
Collection country
Tajikistan
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Isolate name
CCHFV_22_177
Host
Host name - scientific
Hyalomma anatolicum
Host taxon ID
176092
INSDC
INSDC accession L
PV738574.1
INSDC accession M
PV738573.1
INSDC accession S
PV738572.1
NCBI release date
2025-06-15
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
379
G
L:
A
385
T
L:
A
388
G
L:
T
394
A
L:
T
398
C
L:
T
403
C
L:
C
415
T
L:
A
416
G
L:
C
421
T
L:
T
466
C
L:
G
472
A
L:
C
475
T
L:
C
481
T
L:
G
490
A
L:
T
493
C
L:
G
502
A
L:
T
508
A
L:
A
526
G
Show more
M
M:
G
56
A
M:
A
57
C
M:
A
70
G
M:
T
71
A
M:
A
80
G
M:
T
83
C
M:
G
84
T
M:
C
85
T
M:
T
86
C
M:
C
92
T
M:
C
96
T
M:
T
98
C
M:
T
100
C
M:
T
102
C
M:
A
108
T
M:
A
112
G
M:
A
116
T
M:
A
117
G
Show more
S
S:
G
429
A
S:
A
439
G
S:
C
445
T
S:
T
446
C
S:
G
448
C
S:
A
460
G
S:
C
478
T
S:
C
484
A
S:
C
487
T
S:
A
490
G
S:
T
496
C
S:
C
497
T
S:
G
499
A
S:
A
503
C
S:
C
514
T
S:
G
538
A
S:
G
544
A
S:
C
553
A
Show more
Deletions
L:11932-11935, L:11974-11978, L:12060, L:12086, L:12087, M:204-210, M:271-273
Insertions
ins_S:1579:A, ins_M:263:CTT, ins_M:5171:C, ins_M:224:T, ins_M:195:CAAAGG, ins_L:12106:ATTT, ins_L:12108:TTATTTCTAGGGTG, ins_L:11987:T, ins_L:12062:GTTTGC, ins_L:12044:CCTATTTTAGTGC, ins_L:11924:GTGTG, ins_L:11922:T, ins_L:11995:G, ins_L:11993:CG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
S
23
L
GPC:
H
24
S
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
T
32
A
Show more
NP
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
700
I
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
K
769
E
RdRp:
R
770
K
RdRp:
G
772
K
RdRp:
D
773
E
Show more
Deletions
GPC:38-40
Insertions
None
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