Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PP_002YUED.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/PP_002YUED.1/2023-05-07
D'Addiego, J.;
Mullojanova, M.;
Hikmatov, T.;
Tishkova, F.;
Hewson, R.
Submission details
Submission ID
PV738571.1.L/PV738570.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-16 03:16:46 UTC
Date released
2025-06-16 03:17:20 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-16 03:16
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
Alignment and QC metrics L
Completeness L
79.43%
Length L
11876
Total ambiguous nucs L
25
Total deleted nucs L
1
Total frame shifts L
0
Total inserted nucs L
3
Total SNPs L
1246
Total unknown nucs L
2232
Alignment and QC metrics S
Completeness S
73.80%
Length S
1249
Total ambiguous nucs S
5
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
177
Total unknown nucs S
9
Sample details
Earliest release date
2025-06-15
Collection country
Tajikistan
Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Isolate name
CCHFV_27_27
Host
Host name - scientific
Hyalomma anatolicum
Host taxon ID
176092
INSDC
INSDC accession L
PV738571.1
INSDC accession S
PV738570.1
NCBI release date
2025-06-15
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
A
53
G
L:
T
66
G
L:
G
71
T
L:
A
72
C
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
L:
T
151
C
L:
T
154
C
L:
T
157
C
Show more
S
S:
A
425
G
S:
G
428
A
S:
G
429
A
S:
A
439
G
S:
C
445
T
S:
T
446
C
S:
G
448
C
S:
A
460
G
S:
C
472
T
S:
C
484
A
S:
C
487
T
S:
A
490
G
S:
T
496
C
S:
C
497
T
S:
G
499
A
S:
A
503
C
S:
A
520
G
S:
G
538
A
Show more
Deletions
L:59
Insertions
ins_S:1577:A, ins_L:68:CTT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
G
259
E
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
S
124
C
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue