PP_002YUDF.1

Display Name: Tajikistan/PP_002YUDF.1/2023-05-07
D'Addiego, J.; Mullojanova, M.; Hikmatov, T.; Tishkova, F.; Hewson, R.

Submission details

Submission ID
PV738569.1.L/PV738568.1.S
Submitting group
Date submitted
2025-06-16 03:16:46 UTC
Date released
2025-06-16 03:17:20 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-16 03:16insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics L

Completeness L
75.19%
Length L
11699
Total ambiguous nucs L
25
Total deleted nucs L
2
Total frame shifts L
0
Total inserted nucs L
30
Total SNPs L
1230
Total unknown nucs L
2542

Alignment and QC metrics S

Completeness S
73.44%
Length S
1246
Total ambiguous nucs S
9
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
1
Total SNPs S
169
Total unknown nucs S
8

Sample details

Earliest release date
2025-06-15
Collection country
Tajikistan
Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Isolate name
CCHFV_26_26

Host

Host name - scientific
Hyalomma anatolicum
Host taxon ID

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2025-06-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T466C
  • L:G472A
  • L:C475T
  • L:G490A
  • L:T493C
  • L:G502A
  • L:T508A
  • L:A526G
  • L:C529T
  • L:T535C
  • L:G538T
  • L:C541T
  • L:A547G
  • L:T550G
  • L:G553A
  • L:A563G
  • L:A565T
  • L:A571G

    • S

  • S:A425G
  • S:G428A
  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:G448C
  • S:A457G
  • S:A460G
  • S:C472T
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:A520G
    • Deletions
    L:12000, L:12055
    Insertions
    ins_S:1579:A, ins_L:12101:AG, ins_L:12108:ATTTC, ins_L:12044:TCTATTTTAGTGCA, ins_L:12096:C, ins_L:12085:T, ins_L:11922:TC, ins_L:12065:GCTTT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:I157M
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:S409G
  • RdRp:T481A
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508I
  • RdRp:V515I
  • RdRp:R751H
  • RdRp:R764K
    • Deletions
    None
    Insertions
    None

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