PP_002YUCH.1

Display Name: Tajikistan/PP_002YUCH.1/2023-05-07
D'Addiego, J.; Mullojanova, M.; Hikmatov, T.; Tishkova, F.; Hewson, R.

Submission details

Submission ID
PV738567.1.L/PV738566.1.S
Submitting group
Date submitted
2025-06-16 03:16:46 UTC
Date released
2025-06-16 03:17:20 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-16 03:16insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics L

Completeness L
64.21%
Length L
11435
Total ambiguous nucs L
21
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
998
Total unknown nucs L
3640

Alignment and QC metrics S

Completeness S
55.32%
Frame shifts S
NP:435-483(nt:1356-1504)
Length S
926
Total ambiguous nucs S
5
Total deleted nucs S
4
Total frame shifts S
1
Total inserted nucs S
0
Total SNPs S
110
Total unknown nucs S
0

Sample details

Earliest release date
2025-06-15
Collection country
Tajikistan
Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Isolate name
CCHFV_24_24

Host

Host name - scientific
Hyalomma anatolicum
Host taxon ID

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2025-06-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T466C
  • L:G472A
  • L:C475T
  • L:G490A
  • L:T493C
  • L:G502A
  • L:T508A
  • L:A526G
  • L:T535C
  • L:G538T
  • L:C541T
  • L:T550G
  • L:G553A
  • L:A563G
  • L:A565T
  • L:A571G
  • L:G578A
  • L:G583A

    • S

  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:G448C
  • S:A460G
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:A520G
  • S:G538A
  • S:G544A
  • S:G559A
  • S:C571T
    • Deletions
    S:1352-1355
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:G259E
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:N419S

    • RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:V407A
  • RdRp:T481A
  • RdRp:K486R
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508I
  • RdRp:V515I
  • RdRp:K940R
    • Deletions
    NP:433, NP:434
    Insertions
    None

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