Pathoplexus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PP_002YR18.1
Download
Download FASTA
Download metadata TSV
Display Name: France/PP_002YR18.1/2024-09-30
Bollore, K.;
Mignotte, A.;
Lacour, G.;
Mocq, J.;
Courot, O.;
Hanin, J.;
Piorkowski, G.;
Amaral, R.;
Fontaine, A.;
Klitting, R.;
de Lamballerie, X.;
Simonin, Y.
Submission details
Submission ID
WNV-MRV-BVR_MX_consensus
Submitting group
UVE seq
Date submitted
2025-06-11 07:27:53 UTC
Date released
2025-06-11 07:33:58 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-11 07:27
albin
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Pathogenesis and Control of Chronic and Emerging Infections (PCCEI), Altopictus, Unite des Virus emergents (Aix-Marseille Universite - IRD190, Inserm1207 - EFS, IRBA)
INSDC
BioProject accession
PRJEB90344
BioSample accession
SAMEA118545088
INSDC accession
OZ263592.1
Sampling
Collection method
MX
Alignment and QC metrics
Completeness
51.07%
Frame shifts
NS4B:31-33(nt:7006-7014)
Length
8890
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
1
Total inserted nucs
6
Total SNPs
1198
Total stop codons
0
Total unknown nucs
3254
Sample details
Earliest release date
2025-06-11
Collection subdivision level 1
Occitanie
Collection subdivision level 2
Herault
Collection country
France
Collection date
2024-09-30
Collection date (lower bound)
2024-09-30
Collection date (upper bound)
2024-09-30
Host
Host name - scientific
Culicidae
Lineage
Lineage
2
Sequencing
Sequencing instrument
Ion Torrent
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
G
261
A
A
267
T
Show more
Deletions
6994-6996
Insertions
ins_7005:GTTGA, ins_7014:G
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
NS1:
I
194
V
NS1:
R
205
G
NS1:
I
236
V
NS1:
V
245
I
NS1:
L
287
I
NS1:
E
289
D
NS1:
T
298
A
NS1:
Y
323
F
NS1:
D
326
E
NS1:
S
327
N
NS1:
Q
338
T
NS1:
Q
349
R
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS3
NS3:
I
597
A
NS3:
A
610
S
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
L
183
M
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
K
190
R
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
E
55
D
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
A
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
env:
I
253
V
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
S
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
NS4B:28-30
Insertions
ins_NS4B:22:TRETTLG
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue