PP_002YQSS.1

Display Name: Senegal/PP_002YQSS.1/2022-09-01
Sene, O.

Submission details

Submission ID
PP894728.1.M
Submitting group
Date submitted
2025-06-10 09:14:43 UTC
Date released
2025-06-10 09:15:28 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-10 09:14insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur, Dakar, Virology

Alignment and QC metrics M

Completeness M
99.76%
Length M
5356
Total ambiguous nucs M
3
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
141
Total unknown nucs M
0

Sample details

Earliest release date
2025-01-18
Collection country
Senegal
Collection date
2022-09
Collection date (lower bound)
2022-09-01
Collection date (upper bound)
2022-09-30
Isolate name
SH402092

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession M
NCBI release date
2025-01-18

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:T68C
  • M:A70G
  • M:C194T
  • M:C217T
  • M:T259C
  • M:C269T
  • M:C320T
  • M:T360C
  • M:A377G
  • M:T385C
  • M:C404T
  • M:T406C
  • M:C410T
  • M:C412A
  • M:G414A
  • M:C426T
  • M:C428T
  • M:C431T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:P42L
  • GPC:L56P
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:A107E
  • GPC:G108S
  • GPC:P112S
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:S171P
  • GPC:L216P
  • GPC:H238S
  • GPC:K250E
  • GPC:Q273H
  • GPC:D484N
  • GPC:R579K
    • Deletions
    None
    Insertions
    None

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