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PP_002Y9EY.1
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Display Name: Bulgaria/PP_002Y9EY.1/2024-08-15
Christova, I.;
Ngoc, K.;
Stoikov, I.
Submission details
Submission ID
PV696553.1.L/PV696551.1.M/PV696549.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-05 10:45:48 UTC
Date released
2025-06-05 10:46:10 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-05 10:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Center of Infectious and Parasitic Diseases, Microbiology
Alignment and QC metrics L
Completeness L
48.98%
Length L
5931
Total ambiguous nucs L
0
Total deleted nucs L
3
Total frame shifts L
0
Total inserted nucs L
4
Total SNPs L
617
Total unknown nucs L
0
Alignment and QC metrics M
Completeness M
99.59%
Length M
5333
Total ambiguous nucs M
0
Total deleted nucs M
17
Total frame shifts M
0
Total inserted nucs M
6
Total SNPs M
1055
Total unknown nucs M
0
Alignment and QC metrics S
Completeness S
99.70%
Length S
1668
Total ambiguous nucs S
0
Total deleted nucs S
17
Total frame shifts S
0
Total inserted nucs S
18
Total SNPs S
238
Total unknown nucs S
0
Sample details
Earliest release date
2025-06-04
Collection country
Bulgaria
Collection date
2024-08-15
Collection date (lower bound)
2024-08-15
Collection date (upper bound)
2024-08-15
Isolate name
BG111-2024
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession L
PV696553.1
INSDC accession M
PV696551.1
INSDC accession S
PV696549.1
NCBI release date
2025-06-04
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
A
42
T
L:
G
43
T
L:
T
49
C
L:
T
58
C
L:
C
59
T
L:
A
72
G
L:
A
73
C
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
A
113
G
L:
T
131
A
L:
T
139
C
L:
C
148
T
L:
T
151
A
L:
T
154
C
Show more
M
M:
T
40
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
T
91
C
M:
C
92
T
M:
A
99
G
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
T
109
C
Show more
S
S:
C
18
T
S:
C
19
G
S:
T
49
C
S:
A
50
T
S:
C
52
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
Show more
Deletions
L:66-68, M:321-323, M:5194-5196, M:5283-5293, S:15, S:1542-1547, S:1610-1619
Insertions
ins_S:9:G, ins_S:1563:TATG, ins_S:1629:CTATCTTTCA, ins_S:1577:A, ins_S:1567:TC, ins_M:51:G, ins_M:5171:T, ins_M:5201:GCC, ins_M:49:A, ins_L:62:TGTC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
A
GPC:
S
4
L
GPC:
M
6
A
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
G
22
V
GPC:
S
23
Q
GPC:
H
24
P
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
R
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
S
6
N
RdRp:
I
13
V
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
Show more
Deletions
GPC:89, GPC:90
Insertions
ins_GPC:78:L
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