PP_002XUAP.1

Display Name: Ireland/PP_002XUAP.1/2024-12-03
Michael Carr, Charlene Bennett, Weronika Banka, Laura Fahey, Alan Rice, Jonathan Dean, Daniel Hare & Cillian F. De Gascun

Submission details

Submission ID
hRSV/A/Ireland/un-NVRL-GIRL00087986/2024
Submitting group
Date submitted
2025-05-28 16:06:36 UTC
Date released
2025-05-28 16:08:14 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 16:06alanriceOPEN
Data use terms URL

Authors

Author affiliations
National Virus Reference Laboratory, University College Dublin, Dublin, Ireland

INSDC

BioProject accession
BioSample accession
GCA accession
INSDC accession

Alignment and QC metrics

Completeness
94.72%
Length
15085
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
205
Total unknown nucs
665

Sample details

Earliest release date
2025-05-28
Collection country
Ireland
Collection date
2024-12-03
Collection date (lower bound)
2024-12-03
Collection date (upper bound)
2024-12-03

Host

Host name - scientific
Homo sapiens

Lineage

Lineage
A.D.1

Sequencing

Sequencing instrument
Illumina NextSeq 1000 [GENEPIO:0004432]

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C183T
  • G198A
  • A342T
  • A502G
  • G520A
  • G551A
  • G555A
  • A996G
  • G1000A
  • C1012T
  • T1035A
  • A1038T
  • T1048C
  • G1050A
  • T1359C
  • C1464T
  • G1662A
  • T1668C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A518V

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S117L
  • G:I134K
  • G:L142S
  • G:G224E
  • G:V225A
  • G:S243I
  • G:K262E
  • G:I265L
  • G:P276L
  • G:Y280H
  • G:D284G
  • G:E295V
  • G:Y304H
  • G:E308K
  • G:L314P
  • G:T320A

    • L

  • L:I66M
  • L:N143D
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:S1789F
  • L:Y2163N

    • M

  • M:K25R
  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A
  • N:D369N

    • NS1

  • NS1:E91D

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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