PP_002XU17.1

Display Name: USA/PP_002XU17.1/2025-04-23
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV640376.1
Submitting group
Date submitted
2025-05-28 12:45:22 UTC
Date released
2025-05-28 12:45:46 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
93.67%
Length
15140
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
124
Total unknown nucs
878

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-04-23
Collection date (lower bound)
2025-04-23
Collection date (upper bound)
2025-04-23
Isolate name
MN-MDH-RSVB-03122

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A131G
  • A492G
  • G513T
  • G547A
  • G579A
  • A590G
  • C666T
  • G1385A
  • A1462G
  • T1555C
  • G1732A
  • T1846C
  • T1882C
  • C2074T
  • C2198T
  • C2227T
  • A2249G
  • C2554T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:N105S
  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:R98K
  • G:S100G
  • G:P214S
  • G:P221L
  • G:H257Y

    • L

  • L:K260R
  • L:I445V
  • L:K570R
  • L:N1662T
  • L:K1704N
  • L:E1738K
  • L:R1759K
  • L:I1834V

    • M

  • M:T89I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

    • N

  • N:V97I
  • N:K385E

    • NS2

  • NS2:T3A
  • NS2:T28I

    • P

  • P:D229G
    • Deletions
    None
    Insertions
    None

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