PP_002XTWH.1

Display Name: USA/PP_002XTWH.1/2025-04-18
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV640371.1
Submitting group
Date submitted
2025-05-28 12:45:22 UTC
Date released
2025-05-28 12:45:46 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
91.81%
Length
14862
Total ambiguous nucs
1
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
0
Total SNPs
177
Total unknown nucs
891

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-04-18
Collection date (lower bound)
2025-04-18
Collection date (upper bound)
2025-04-18
Isolate name
MN-MDH-RSVB-03117

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
B.D.4.1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • T540C
  • G579A
  • G781A
  • T808C
  • A822G
  • C883T
  • A1066G
  • T1171C
  • G1385A
  • T1411C
  • C1429T
  • A1597G
  • T1753C
  • G1801A
  • T1846C
  • G1978A
  • C2198T
    • Deletions
    973, 3202-3204, 7608
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R191K
  • F:R209Q
  • F:N554K

    • G

  • G:A74V
  • G:R98K
  • G:N121D
  • G:K123T
  • G:T131V
  • G:I137T
  • G:L217P
  • G:I227T
  • G:S265P
  • G:Y285Q
  • G:I288T
  • G:I310T
  • G:*311Q

    • L

  • L:P141L
  • L:L454F
  • L:N511T
  • L:A1479V
  • L:V1716I
  • L:G1735E
  • L:S1847N
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:C49Y
  • M2-2:L50F

    • N

  • N:V97I

    • NS2

  • NS2:K80R

    • P

  • P:T60I
  • P:P73S

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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