PP_002XSHA.1

Display Name: USA/PP_002XSHA.1/2025-03-30
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV629299.1
Submitting group
Date submitted
2025-05-28 12:45:22 UTC
Date released
2025-05-28 12:45:46 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
96.85%
Length
15140
Total ambiguous nucs
2
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
158
Total unknown nucs
393

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-30
Collection date (lower bound)
2025-03-30
Collection date (upper bound)
2025-03-30
Isolate name
MN-MDH-RSVB-03039

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
B.D.E.1.2

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A294G
  • G513T
  • G579A
  • C583T
  • G599A
  • C643T
  • C829T
  • G910A
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • A1507G
  • G1732A
  • G1768A
  • T1846C
  • C2074T
  • C2198T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:H128Y
  • G:T131A
  • G:I137T
  • G:P152S
  • G:P214S
  • G:P221L
  • G:V249M
  • G:I252T
  • G:T254I
  • G:I268T
  • G:A269V
  • G:S275P
  • G:K276E
  • G:Y285H
  • G:S307P
  • G:*311Q

    • L

  • L:N149T
  • L:S169P
  • L:K570R
  • L:I1751V
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:M80V

    • NS2

  • NS2:D6N

    • SH

  • SH:G58R
    • Deletions
    None
    Insertions
    None

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