PP_002XPP1.1

Display Name: USA/PP_002XPP1.1/2025-04-17
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV640329.1
Submitting group
Date submitted
2025-05-28 12:27:48 UTC
Date released
2025-05-28 12:28:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
95.76%
Length
15046
Total ambiguous nucs
5
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
217
Total unknown nucs
463

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-04-17
Collection date (lower bound)
2025-04-17
Collection date (upper bound)
2025-04-17
Isolate name
MN-MDH-RSVA-03075

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G192A
  • G587T
  • G1034A
  • G1049T
  • G1050A
  • G1077A
  • T1359C
  • T1413A
  • T1422C
  • C1788T
  • C1806T
  • T2165C
  • C2181T
  • A2392G
  • T2481C
  • G2534A
    • Deletions
    3181, 4174, 4175
    Insertions
    ins_3214:G, ins_15115:T

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:I99T
  • G:L104P
  • G:T113I
  • G:L115P
  • G:V131D
  • G:I134K
  • G:T147I
  • G:N178G
  • G:K196T
  • G:K213R
  • G:D214Y
  • G:P222L
  • G:G224E
  • G:V225A
  • G:S243I
  • G:T245A

    • L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:A1479V
  • L:N1719S
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:D64G
  • M2-2:T79A

    • N

  • N:V352A

    • P

  • P:L55P
  • P:V73I
  • P:T92M

    • SH

  • SH:R59K
    • Deletions
    None
    Insertions
    None

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