PP_002XML9.1

Display Name: USA/PP_002XML9.1/2025-03-31
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV629346.1
Submitting group
Date submitted
2025-05-28 12:27:48 UTC
Date released
2025-05-28 12:28:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
91.51%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
222
Total unknown nucs
1114

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-31
Collection date (lower bound)
2025-03-31
Collection date (upper bound)
2025-03-31
Isolate name
MN-MDH-RSVA-02944

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.5

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • A274G
  • C379T
  • T463C
  • A514T
  • G587A
  • A612G
  • A623G
  • G664A
  • A706G
  • A712G
  • G1050A
  • T1061C
  • T1218C
  • T1242C
  • T1320C
  • T1359C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T122A

    • G

  • G:P71L
  • G:T89I
  • G:H90Y
  • G:L101F
  • G:T112A
  • G:S121G
  • G:P126S
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:G254R
  • G:K262E
  • G:I265L
  • G:S270P
  • G:P276Q

    • L

  • L:P171L
  • L:T179A
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:V1943D

    • M2-1

  • M2-1:K52R
  • M2-1:N121T
  • M2-1:S176P

    • M2-2

  • M2-2:T1M
  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:Q70R
  • M2-2:I82T

    • NS1

  • NS1:N69D

    • NS2

  • NS2:H5R
  • NS2:T9A

    • P

  • P:L55P

    • SH

  • SH:C45Y
    • Deletions
    None
    Insertions
    None

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