PP_002XM2C.1

Display Name: USA/PP_002XM2C.1/2025-04-03
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV629328.1
Submitting group
Date submitted
2025-05-28 12:27:48 UTC
Date released
2025-05-28 12:28:26 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
95.03%
Length
14855
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
208
Total unknown nucs
391

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-04-03
Collection date (lower bound)
2025-04-03
Collection date (upper bound)
2025-04-03
Isolate name
MN-MDH-RSVA-02926

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.5.2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • T246C
  • T333C
  • T697C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1281C
  • T1359C
  • G1368A
  • T1380C
  • T1422C
  • T1443C
    • Deletions
    4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A103T
  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:L101F
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:V225I
  • G:G232R
  • G:T235I
  • G:S243I
  • G:L248I
  • G:K262E
  • G:E263D
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:V303A
  • G:Y304H

    • L

  • L:T104A
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:A1927S
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:S46N

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None

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