PP_002XCLJ.1

Display Name: USA/PP_002XCLJ.1/2025-03-22
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546206.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 15:00:01 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27

Alignment and QC metrics

Completeness
95.11%
Length
15140
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
150
Total unknown nucs
661

Sample details

Earliest release date
2025-04-27
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-03-22
Collection date (lower bound)
2025-03-22
Collection date (upper bound)
2025-03-22
Isolate name
MN-MDH-RSVB-02870

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
B.D.E.1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T425C
  • A477G
  • G513T
  • G579A
  • G639T
  • C739T
  • C998A
  • G1385A
  • A1642G
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • G3036C
  • A3060G
  • C3082T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:I326T
  • F:F387Y
  • F:S389P
  • F:N466S

    • G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:T226I
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:I4T
  • L:R73K
  • L:G146S
  • L:K570R
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:R19I
    • Deletions
    None
    Insertions
    None

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