PP_002X0RL.1

Display Name: China/PP_002X0RL.1/2016-10-10
Y. Yu, X. Yu, F. Cao, X. Zheng, L. Ao, S. Cheng, X. Qiu, Y. Zhou & J. Li

Sample details

Collection date
2016-10-10
Country
China
Isolate name
B-16S212

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

Authors

Author affiliations
Hangzhou Center for Disease Control and Prevention (Hangzhou Health Supervision Institution), Department of Microbiology Laboratory

INSDC

INSDC accession
NCBI release date
2025-04-02
NCBI update date
2025-04-02

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15222
Completeness
100.00%
# of SNPs
101
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PV367352.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 14:59:29 UTC
Earliest release date
2025-04-02

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C389A
  • G513T
  • T577C
  • G579A
  • T592C
  • T791C
  • G1216T
  • G1385A
  • T1846C
  • G1978A
  • C2198T
  • T2457C
  • T2529C
  • C2679T
  • C2886T
  • C3067T
  • C3082T
  • A3106G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:Q113R
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209Q

    • G

  • G:A74V
  • G:T131A
  • G:I137T
  • G:N154K
  • G:L217P
  • G:I252T
  • G:Y285H
  • G:I288T
  • G:I310T

    • L

  • L:V179I
  • L:A1479V
  • L:V1716I
  • L:T1987I

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None

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