PP_002VRQ1.1

Display Name: United_Kingdom/PP_002VRQ1.1/2021-09-17
D. M. Maloney, G. Fernandes, S. Jasim, R. Dewar & K. E. Templeton

Sample details

Collection date
2021-09-17
Country
United Kingdom
Admin level 1
Scotland
Isolate name
RSVLO450

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
University of Edinburgh, Institute of Ecology and Evolution

INSDC

INSDC accession
NCBI release date
2024-09-25
NCBI update date
2024-09-25

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15139
Completeness
94.20%
# of SNPs
103
# of inserted bases
2
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
799
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PQ349059.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 14:58:26 UTC
Earliest release date
2024-09-25

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A211G
  • G513T
  • G546A
  • G579A
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • C2707T
  • G3036C
  • A3060G
  • C3082T
  • T3095C
  • T3096C
    • Deletions
    4586
    Insertions
    ins_15092:AT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:N201S
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:I111T
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:C1184Y
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:N52S
    • Deletions
    None
    Insertions
    None

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