PP_002VFS7.1

Display Name: China/PP_002VFS7.1/2023-12-10
X. Wei, L. Wang, M. Li, J. Qi, L. Kang, G. Hu, C. Gong, C. Wang, Y. Wang, F. Huang & G. F. Gao

Sample details

Collection date
2023-12-10
Country
China
Admin level 1
Beijing
Isolate name
2023-00R0547

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Beijing Center for Disease Prevention and Control, Immunological Prevention

INSDC

INSDC accession
NCBI release date
2024-11-09
NCBI update date
2024-11-09

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15179
Completeness
99.68%
# of SNPs
134
# of inserted bases
0
# of deleted bases
2
# of ambiguous bases
7
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PP974198.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 14:57:55 UTC
Earliest release date
2024-11-09

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A16G
  • A134G
  • G513T
  • G579A
  • C688T
  • C998A
  • G1385A
  • G1732A
  • C1792T
  • T1846C
  • G1972A
  • C2074T
  • C2198T
  • C2554T
  • A2928G
  • G3036C
  • A3060G
  • C3082T
    • Deletions
    973, 4586
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R42K
  • F:S190N
  • F:S211D
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:I445V
  • L:K570R
  • L:R1759K
  • L:V1965I
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None

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