PP_002UJGT.1

Display Name: USA/PP_002UJGT.1/2023-12-28
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans & X. Wang

Sample details

Collection date
2023-12-28
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-00380

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2024-04-29
NCBI update date
2024-04-29
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15140
Completeness
93.63%
# of SNPs
134
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
886
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PP709424.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 14:57:24 UTC
Earliest release date
2024-04-29

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A480G
  • G513T
  • G579A
  • T996C
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • T2014C
  • C2074T
  • C2134T
  • C2191T
  • C2198T
  • C2554T
  • G2607A
  • C2691T
  • G3036C
  • A3060G
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:K68N
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:V45A
  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:I252T
  • G:T253A
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:R1759K
  • L:T1987I
  • L:I2152V

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue