PP_002UD0W.1

Display Name: China/PP_002UD0W.1/2012-08
M. N. Amjad, Y. Hu, B. Shen, L. Yue, H. Xu, W. Dong, D. Qian, M. A. Ashraf, Gu. Din, M. A. Raza & L. Chen

Sample details

Collection date
2012-08
Country
China
Isolate name
RSVB-B612083001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4

Authors

Author affiliations
Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, CAS Key Laboratory of Molecular Virology & Immunology, Institutional Center for Shared Technologies and Facilities, Pathogen Discovery and Big Data Platform

INSDC

INSDC accession
NCBI release date
2024-12-31
NCBI update date
2024-12-31

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1680
Completeness
11.04%
# of SNPs
34
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PP647877.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 14:56:53 UTC
Earliest release date
2024-12-31

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G5695A
  • A5700G
  • T5702G
  • T5720G
  • T5729G
  • G5735A
  • T5741C
  • A5748G
  • G5753A
  • A5780G
  • T5789G
  • G5800A
  • T5813G
  • T5840G
  • A5879T
  • T5903A
  • T5948A
  • G6001A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R7K
  • F:S9G
  • F:N18K
  • F:S25G
  • F:S38R
  • F:R42K
  • F:S46R
  • F:S55R
  • F:K68N
  • F:R109K
  • F:M115I
  • F:T118P
  • F:L173S
  • F:R191K
  • F:M206I
  • F:R209Q
  • F:G438A
    • Deletions
    None
    Insertions
    None

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