PP_002UCTA.1

Display Name: China/PP_002UCTA.1/2021-09
M. N. Amjad, Y. Hu, B. Shen, L. Yue, H. Xu, W. Dong, D. Qian, M. A. Ashraf, Gu. Din, M. A. Raza & L. Chen

Sample details

Collection date
2021-09
Country
China
Isolate name
RSVB-B621092302

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Authors

Author affiliations
Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, CAS Key Laboratory of Molecular Virology & Immunology, Institutional Center for Shared Technologies and Facilities, Pathogen Discovery and Big Data Platform

INSDC

INSDC accession
NCBI release date
2024-12-31
NCBI update date
2024-12-31

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1647
Completeness
10.85%
# of SNPs
38
# of inserted bases
0
# of deleted bases
4
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
# of stop codons
0
Frame shifts
F:551-575(nt:7324-7400)

Submission details

Submission ID
PP647870.1
Submitting group
Date submitted
2025-05-22 14:46:10 UTC
Date released
2025-05-22 14:56:53 UTC
Earliest release date
2024-12-31

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T5683G
  • G5695A
  • T5702G
  • T5720G
  • T5729G
  • A5732T
  • T5734G
  • G5753A
  • A5757T
  • A5783T
  • T5789G
  • G5800A
  • T5813G
  • G5821A
  • T5829G
  • T5840G
  • A5844T
  • G5853A
    • Deletions
    7320-7323
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:L3W
  • F:R7K
  • F:S9R
  • F:N18K
  • F:L20W
  • F:I28L
  • F:S38R
  • F:R42K
  • F:S46R
  • F:R49K
  • F:W52G
  • F:S55R
  • F:I57L
  • F:E60K
  • F:N63I
  • F:K68N
  • F:N70K
  • F:T72P
    • Deletions
    F:549, F:550
    Insertions
    None

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