PP_002TWCR.1

Netherlands/310101005/2017-11-14
A. C. Langedijk, R. J. Lebbink, L. J. Bont & A. Evers

UMC Utrecht, Paediatric Infectious Diseases

Sample details

Collection date
2017-11-14
Sampling location
Netherlands
Isolate name
310101005

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Host

Host

Submission details

Submission ID
PP377211.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:56:53 UTC
Earliest release date
2024-04-09

Alignment and QC

Length
15222 (99.9%)
# of SNPs
174
# of inserted bases
13
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • A40T
  • C52A
  • C263T
  • G513T
  • G579A
  • C829T
  • C994T
  • C1001T
  • T1180C
  • G1385A
  • T1621C
  • T1698C
  • C1804T
  • A1819G
  • T1846C
  • C2125T
Deletions
973
Insertions
ins_0:ACACTCGAAAAAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:M115V
  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
  • F:P312H
  • F:L462Q

G

  • G:N4T
  • G:A74V
  • G:R98E
  • G:A107T
  • G:T131A
  • G:T136R
  • G:I137T
  • G:I288T
  • G:E303K
  • G:P304S
  • G:I310N

L

  • L:V715I
  • L:A1479V
  • L:A1712T
  • L:V1716I
  • L:P1729S
  • L:H1897Y
  • L:D1985N
  • L:T1987I

M2-1

  • M2-1:P32H
  • M2-1:S142N
  • M2-1:S182N

M2-2

  • M2-2:I2T

N

  • N:V97I
  • N:I201T

SH

  • SH:D64N
Deletions
N/A
Insertions
N/A

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