PP_002TPUZ.1

Display Name: Brazil/PP_002TPUZ.1/2018-06-21
A. C. Langedijk, R. J. Lebbink, L. J. Bont & A. Evers

Sample details

Collection date
2018-06-21
Country
Brazil
Isolate name
550101010

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15223
Completeness
99.91%
# of SNPs
80
# of inserted bases
13
# of deleted bases
0
# of ambiguous bases
1
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PP376989.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:56:21 UTC
Earliest release date
2024-04-09

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • T69A
  • G251A
  • G513T
  • G579A
  • C772T
  • A802G
  • C974T
  • A1132G
  • A1336T
  • G1385A
  • T1846C
  • C2198T
  • C2521T
  • C2542T
  • T2781C
  • C3067T
    • Deletions
    None
    Insertions
    ins_0:ACACTCGAAAAAA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:F12L
  • F:K272N
  • F:S276N
  • F:E463D

    • G

  • G:V69I
  • G:A74V
  • G:S95L
  • G:H127Y
  • G:T131A
  • G:I137T
  • G:N176S
  • G:N291I
  • G:S305F
  • G:I310T

    • L

  • L:T1987I
  • L:I2016M

    • M2-2

  • M2-2:I2T
  • M2-2:E25K

    • N

  • N:V97I

    • NS1

  • NS1:S5T

    • P

  • P:P73S
  • P:P80S
    • Deletions
    None
    Insertions
    None

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