PP_002RVHK.1

Display Name: Uganda/PP_002RVHK.1/2017-06-29
S. O. Odoyo, A. W. Lambisia, N. Murunga, C. S. Lewa, G. Maina, D. Okanda, M. Mutunga, C. N. Agoti, J. D. Nokes & G. L. Githinji

Sample details

Collection date
2017-06-29
Country
Uganda
Admin level 1
Soroti
Isolate name
Soroti/RSVB/CST40351/29-06-2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

Authors

Author affiliations
KEMRI Wellcome Trust, Epidemiology and Demography

INSDC

INSDC accession
NCBI release date
2023-08-19
NCBI update date
2023-08-19

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
14868
Completeness
84.69%
# of SNPs
111
# of inserted bases
0
# of deleted bases
63
# of ambiguous bases
0
# of unknown bases
2039
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OR256297.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:55:17 UTC
Earliest release date
2023-08-19

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C116T
  • G258A
  • T330C
  • T357C
  • G513T
  • G547A
  • G579A
  • G625A
  • G781A
  • G1385A
  • A1597G
  • T1621C
  • T1846C
  • C1888A
  • G1978A
  • C2198T
  • C2483T
  • T2529C
    • Deletions
    972, 973, 5399-5458, 7408
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:K65Q
  • F:N169S
  • F:R191K
  • F:M206I
  • F:R209Q

    • G

  • G:V45I
  • G:A74V
  • G:V99F
  • G:A107T
  • G:T131A
  • G:I137T
  • G:L217P
  • G:Y285H
  • G:I288T
  • G:I310T

    • L

  • L:I183N
  • L:A1479V
  • L:H1599Y
  • L:V1716I
  • L:Y1961H
  • L:T1987I

    • M2-2

  • M2-2:I2T

    • N

  • N:V97I

    • NS1

  • NS1:D68N

    • NS2

  • NS2:M14I

    • P

  • P:T60I
  • P:S161T

    • SH

  • SH:D64N
    • Deletions
    G:252-271
    Insertions
    None

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