PP_002RF3U.1

Display Name: South_Africa/PP_002RF3U.1/2017-05-12
D. Wilkins, A. C. Langedijk, R. J. Lebbink, C. A. Morehouse, M. E. Abram, B. Ahani, A. A. Aksyuk, E. Baraldi, T. Brady, A. T. Chen, H. Chi, E. H. Choi, R. Cohen, D. M. Danilenko, V. Gopalakrishnan, A. Greenough, T. Heikkinen, M. Hosoya, C. Keller, E. J. Kelly, L. Kragten-Tabatabaie, F. Martinon-Torres, A. H. Mascarenas-de Los Santos, M. C. Nunes, ..., L. J. Bont

Sample details

Collection date
2017-05-12
Country
South Africa
Isolate name
SA18_132

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1

Authors

Author affiliations
Astrazeneca, Early Vaccines & Immune Therapies

INSDC

INSDC accession
NCBI release date
2023-03-05
NCBI update date
2023-03-05

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1725
Completeness
11.33%
# of SNPs
14
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OQ280799.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:55:17 UTC
Earliest release date
2023-03-05

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T5903A
  • T5948A
  • C6017T
  • G6247A
  • A6277G
  • G6293A
  • G6301A
  • C6314T
  • G6329A
  • T6701C
  • C6731T
  • A7100C
  • G7232A
  • T7376C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209Q
    • Deletions
    None
    Insertions
    None

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