PP_002RDY5.1

South_Africa/SA18_044/2015-08-12
D. Wilkins, A. C. Langedijk, R. J. Lebbink, C. A. Morehouse, M. E. Abram, B. Ahani, A. A. Aksyuk, E. Baraldi, T. Brady, A. T. Chen, H. Chi, E. H. Choi, R. Cohen, D. M. Danilenko, V. Gopalakrishnan, A. Greenough, T. Heikkinen, M. Hosoya, C. Keller, E. J. Kelly, L. Kragten-Tabatabaie, F. Martinon-Torres, A. H. Mascarenas-de Los Santos, M. C. Nunes, ..., L. J. Bont

Astrazeneca, Early Vaccines & Immune Therapies

Sample details

Collection date
2015-08-12
Sampling location
South Africa
Isolate name
SA18_044

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.4

INSDC

INSDC accession
NCBI release date
2023-03-05
NCBI update date
2023-03-05

Host

Host

Submission details

Submission ID
OQ280760.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:55:17 UTC
Earliest release date
2023-03-05

Alignment and QC

Length
1725 (11.3%)
# of SNPs
22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • T5741C
  • T5762C
  • T5903A
  • T5948A
  • C6017T
  • T6128C
  • A6161G
  • C6192T
  • T6193C
  • G6247A
  • A6277G
  • G6293A
  • C6300A
  • G6301A
  • G6329A
  • T6429C
  • T6536C
  • T6701C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:L173S
  • F:R191K
  • F:N201S
  • F:M206I
  • F:R209K
Deletions
N/A
Insertions
N/A

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