PP_002MAVN.1

Spain/PP_002MAVN.1/2019-12-27
G.-L. Lin, S. B. Drysdale, M. D. Snape, D. O'Connor, A. Brown, G. MacIntyre-Cockett, E. Mellado-Gomez, M. de Cesare, D. Bonsall, M. A. Ansari, D. Oner, J. Aerssens, C. Butler, L. Bont, P. Openshaw, F. Martinon-Torres, H. Nair, R. Bowden, T. Golubchik & A. J. Pollard

Oxford Vaccine Group, Department of Paediatrics, University of Oxford

Sample details

Collection date
2019-12-27
Sampling location
Spain
Isolate name
SE02-0020-V01

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 14:46insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1.1

INSDC

INSDC accession
BioProject accession
NCBI release date
2021-08-18
NCBI update date
2021-08-18

Host

Host

Submission details

Submission ID
MZ516020.1
Submitting group
Date submitted
2025-05-22 14:45:31 UTC
Date released
2025-05-22 14:52:37 UTC
Earliest release date
2021-08-18

Alignment and QC

Length
15276 (100%)
# of SNPs
59
# of inserted bases
54

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • G579A
  • C643T
  • G1031A
  • G1385A
  • A1528G
  • T1846C
  • C2198T
  • A2263C
  • C3055T
  • C3082T
  • C3146T
  • C3180T
  • G3411A
  • T4043C
  • T4049C
  • T4058C
Deletions
N/A
Insertions

ins_0:ACGCGAAAAAATGCGTACTACAAACTTGCACACTCGAAAAAA, ins_15222:TTTTTTTCTCGT

Amino acid mutations

Mutations called relative to the OP975389.1 reference

Substitutions

F

  • F:K68N

G

  • G:A74V
  • G:L217P
  • G:P221S
  • G:I227T
  • G:V249A
  • G:S265P
  • G:T274I
  • G:S307P

L

  • L:A1489T
  • L:G1649R
  • L:H1750Y

M2-2

  • M2-2:I2T

N

  • N:V97I
Deletions
N/A
Insertions
N/A

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