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Status
PP_002KDP1.1
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Download FASTA
Download metadata TSV
Display Name: USA/PP_002KDP1.1/2024-10-29
Paull,
J.; Messer,
K.; Adams,
G.; Nabatanzi,
D.; Dobbins,
S.; Tomkins-Tinch,
C.; Mboowa,
G.; Luebbert,
L.; Worby,
C.; Wewior,
N.; Samani,
P.; DeRuff,
K.; Blumenstiel,
B.; Moreno,
G.; Earl,
A.; Gnirke,
A.; MacInnis,
B.; Sabeti,
P.; Lemieux,
J.; Park,
D.
Submission details
Submission ID
PV178565.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-22 14:45:40 UTC
Date released
2025-05-22 15:32:26 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-05-22 14:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
BioProject accession
PRJNA1052714
BioSample accession
SAMN46722057
INSDC accession
PV178565.1
Raw reads accession
SRR32342702
NCBI release date
2025-03-04
NCBI update date
2025-03-04
Alignment and QC metrics
Completeness
99.90%
Frame shifts
G:228-237(nt:6927-6957)
Length
13306
Total ambiguous nucs
10
Total deleted nucs
49
Total frame shifts
1
Total inserted nucs
8
Total SNPs
1060
Total unknown nucs
0
Sample details
Earliest release date
2025-03-04
Collection subdivision level 1
Massachusetts
Collection country
USA
Collection date
2024-10-29
Collection date (lower bound)
2024-10-29
Collection date (upper bound)
2024-10-29
Isolate name
HMPV/human/USA/MA-Broad_BWH-22786/2024
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
Lineage
Lineage
A2.2.2
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
11
A
A
12
G
C
15
A
T
24
C
A
51
G
T
70
C
A
117
G
G
126
A
T
129
C
T
138
A
G
180
A
G
195
A
A
204
G
G
208
A
C
213
T
T
249
C
T
259
C
A
264
G
Show more
Deletions
4692-4719, 6224, 6907-6926
Insertions
ins_6118:A, ins_13275:CAAAAT, ins_7133:T
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
F:
V
510
I
F:
K
518
R
F:
S
528
N
F:
N
539
S
G
G:
T
10
A
G:
K
29
R
G:
V
34
I
G:
T
40
A
G:
L
41
M
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
T
59
A
G:
S
69
P
G:
M
71
T
G:
S
74
N
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
I
G:
S
85
P
G:
T
87
I
Show more
L
L:
I
75
V
L:
S
132
G
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
W
390
L
L:
K
496
T
L:
T
505
A
L:
K
530
R
L:
K
538
R
L:
D
546
E
L:
G
760
D
L:
S
769
R
L:
S
895
T
L:
R
951
K
L:
A
954
T
L:
R
957
K
L:
A
960
T
Show more
M
M:
N
66
S
M:
K
87
R
M2-1
M2-1:
V
130
I
M2-1:
E
170
D
M2-2
M2-2:
H
35
Q
M2-2:
D
37
E
N
N:
A
57
T
N:
I
103
V
N:
H
220
Y
P
P:
G
31
S
P:
N
44
S
P:
A
59
T
P:
T
78
I
P:
K
79
R
P:
I
82
A
P:
A
85
T
P:
V
88
I
P:
A
112
S
P:
E
152
D
P:
V
214
I
P:
K
227
R
P:
S
239
N
P:
S
242
T
P:
T
280
L
P:
S
284
N
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
S
68
P
SH:
K
71
E
SH:
S
73
L
SH:
S
74
P
SH:
N
87
D
SH:
D
89
G
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
P
SH:
T
135
S
SH:
T
137
I
SH:
N
139
S
Show more
Deletions
G:221-227
Insertions
None
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