PP_002KDEL.1

Display Name: Bangladesh/PP_002KDEL.1/2025-01-16
Talha, M.; Karim, Y.; Alam, M. S.; Howlader, R.; Rahman, R.; Khair, S.; Al Faisal, A.; Haque, A.; Begum, M. N.; Rahman, M.

Submission details

Submission ID
PV088212.1
Submitting group
Date submitted
2025-05-22 14:45:40 UTC
Date released
2025-05-22 15:30:52 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 14:45insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
icddr, b, Virology Laboratory, Infectious Diseases Division (IDD)

Alignment and QC metrics

Completeness
1.73%
Length
231
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
25
Total unknown nucs
0

Sample details

Earliest release date
2025-03-16
Collection country
Bangladesh
Collection date
2025-01-16
Collection date (lower bound)
2025-01-16
Collection date (upper bound)
2025-01-16
Isolate name
07_2250103023_2025_Bangladesh

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-03-16
NCBI update date
2025-03-16

Lineage

Lineage
B1

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • A3573T
  • C3574A
  • A3587G
  • A3588G
  • G3594A
  • C3597T
  • C3609T
  • A3615G
  • C3621T
  • T3624C
  • G3648A
  • C3651T
  • A3669G
  • C3681T
  • T3684A
  • A3687G
  • T3705A
  • A3720T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:R175S
  • F:K179R
  • F:N233Y
  • F:M250I
    • Deletions
    None
    Insertions
    None

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