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Status
PP_002KCHE.1
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Download FASTA
Download metadata TSV
Display Name: Brazil/PP_002KCHE.1/2025-01-03
Sacchi,
C. T.; Campos,
K. R.; Santos,
K. C. O.
Submission details
Submission ID
PV081665.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-22 14:45:40 UTC
Date released
2025-05-22 15:30:52 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-05-22 14:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Instituto Adolfo Lutz, Strategic Laboratory
Alignment and QC metrics
Completeness
99.97%
Length
13358
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
16
Total SNPs
1036
Total unknown nucs
0
Sample details
Earliest release date
2025-03-05
Collection subdivision level 1
Sao Paulo, Sao Paulo
Collection country
Brazil
Collection date
2025-01-03
Collection date (lower bound)
2025-01-03
Collection date (upper bound)
2025-01-03
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession
PV081665.1
NCBI release date
2025-03-05
NCBI update date
2025-03-05
Lineage
Lineage
A2.2.1
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
11
A
C
15
A
T
70
C
G
81
A
T
102
A
A
117
G
G
126
A
T
129
C
T
138
A
G
144
A
A
186
G
G
195
A
A
204
G
G
208
A
C
213
T
T
259
C
A
264
G
G
276
A
Show more
Deletions
4709-4711, 6224
Insertions
ins_4682:ATGGCTTCA, ins_13280:TTAAAA, ins_7130:G
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
G
G:
T
10
A
G:
V
34
I
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
S
62
T
G:
S
69
T
G:
M
71
T
G:
S
74
L
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
L
G:
D
83
Y
G:
S
85
P
G:
T
87
I
G:
S
89
P
G:
S
90
N
Show more
L
L:
I
75
V
L:
V
79
I
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
I
283
V
L:
V
331
A
L:
W
390
L
L:
T
429
N
L:
K
496
T
L:
E
540
G
L:
D
546
E
L:
V
654
I
L:
V
772
I
L:
R
951
K
L:
R
957
K
L:
A
960
M
L:
D
1037
E
Show more
M
M:
I
23
V
M:
N
66
S
M2-1
M2-1:
E
170
D
M2-2
M2-2:
D
37
E
M2-2:
S
49
F
N
N:
A
57
T
N:
V
92
T
N:
I
103
V
P
P:
G
31
S
P:
V
46
I
P:
A
59
T
P:
P
64
L
P:
T
78
I
P:
I
82
V
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
S
239
N
P:
S
242
T
P:
P
277
L
P:
T
280
I
P:
D
282
E
P:
S
284
N
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
K
71
E
SH:
S
73
L
SH:
S
74
P
SH:
N
87
D
SH:
Q
92
H
SH:
S
96
R
SH:
N
103
D
SH:
S
108
K
SH:
N
115
S
SH:
T
120
A
SH:
S
132
L
SH:
T
135
S
SH:
K
136
E
SH:
T
137
I
SH:
N
139
S
Show more
Deletions
None
Insertions
None
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