Pathoplexus
HMPV
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PP_002KB3A.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/PP_002KB3A.1/2024-06-24
Longley,
P. C.; Goya,
S.; Varela,
C.; Kim,
D. Y.; Greninger,
A. L.
Submission details
Submission ID
PV052187.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-22 14:45:40 UTC
Date released
2025-05-22 15:30:52 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-05-22 14:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
University of Washington, University of Washington
INSDC
BioProject accession
PRJNA1027483
BioSample accession
SAMN46350521
INSDC accession
PV052187.1
Raw reads accession
SRR32080719
NCBI release date
2025-02-05
NCBI update date
2025-02-05
Alignment and QC metrics
Completeness
99.86%
Frame shifts
G:228-237(nt:6927-6957)
Length
13402
Total ambiguous nucs
0
Total deleted nucs
49
Total frame shifts
1
Total inserted nucs
120
Total SNPs
1074
Total unknown nucs
0
Sample details
Earliest release date
2025-02-05
Collection subdivision level 1
WA
Collection country
USA
Collection date
2024-06-24
Collection date (lower bound)
2024-06-24
Collection date (upper bound)
2024-06-24
Isolate name
hMPV/349425/USA/2024
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
Lineage
Lineage
A2.2.2
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
T
24
C
A
51
G
T
70
C
A
117
G
G
126
A
T
129
C
T
138
A
G
180
A
G
195
A
A
204
G
G
208
A
C
213
T
T
246
C
T
249
C
T
259
C
A
264
G
G
276
A
T
285
C
Show more
Deletions
4692-4719, 6224, 6907-6926
Insertions
ins_13273:TTAAA, ins_13350:GC, ins_6118:A, ins_6690:TACAGAAGAAACATCCCAAGTACAGTCTCCAAAGCACAACTCCCATCACGGGCAACAACGAAGGCGGTCTCCAGAGCCACCACCCTCAGAACAAAAACAAAATCGACAGCC, ins_7133:T
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
F:
V
510
I
F:
K
518
R
F:
N
539
S
G
G:
T
10
A
G:
K
29
R
G:
V
34
I
G:
T
40
A
G:
L
41
M
G:
I
43
M
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
T
59
A
G:
S
69
P
G:
M
71
T
G:
S
74
N
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
I
G:
S
85
P
Show more
L
L:
I
75
V
L:
S
132
G
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
W
390
L
L:
K
496
T
L:
T
505
A
L:
N
525
D
L:
K
530
R
L:
K
538
R
L:
D
546
E
L:
G
760
D
L:
S
769
R
L:
S
895
T
L:
R
951
K
L:
A
954
T
L:
R
957
K
Show more
M
M:
I
23
V
M:
N
66
S
M:
K
87
R
M2-1
M2-1:
N
116
S
M2-1:
V
130
I
M2-1:
E
170
D
M2-2
M2-2:
H
35
Q
M2-2:
D
37
E
N
N:
A
57
T
N:
V
92
A
N:
I
103
V
N:
H
220
Y
P
P:
G
31
S
P:
N
44
S
P:
A
59
T
P:
T
78
I
P:
K
79
R
P:
I
82
A
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
K
227
R
P:
S
239
N
P:
S
242
I
P:
T
280
L
P:
S
284
N
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
S
68
P
SH:
K
71
E
SH:
S
74
P
SH:
N
87
D
SH:
I
90
V
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
P
SH:
T
135
S
SH:
T
137
I
SH:
N
139
S
SH:
K
142
R
Show more
Deletions
G:221-227
Insertions
ins_G:148:YRRNIPSTVSKAQLPSRATTKAVSRATTLRTKTKSTA
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue